#Releases and changes

- more on syntax

Readme

better feedback when custom gzlm fails

Fix custom distribution updating

Fix F-test model comparison in GLM

R nested formulas

Better handling of zeros

Fix multinomial mixed

fix some table update

nesting and crossing by formula in linear mixed model

Better optimizer for glmer

Identify by row number extreme cases in assumptions check plots

more info for residuals covariance matrix

Assumptions plots for autocorrelated mixed models

fixing blocks of random effects in GZ mixed

Fix the random blocks

Improve the models comparison table

Fix predicted with missing

Precision information in beta models

beta regression

it works

autoregressive and unstructured residual variances and covariances

better dispatch

fixing some plot aesthetics

More solid nested formulas

Version 3

Support for parallel computations of bootstrap stats

Work on bootstrap

Adjusted R2 for gzlm

Model comparison for clm

Fix posthoc for clm

Marginal effects for ordinal models

Parallel test for proportional odds models

Different heteroschedasticity-consistent standard error methods for the general linear model

Efficient bootstrap confidence intervals

New names for commands in R interface

Pretty good R interface

Plots for all generalized mixed models

Removable notes for tables

Robust F-tests for lm models

Models comparison for multinomila mixed models

Multinomial mixed model

Options for methods for plotting random effects

Better random effects plot

Unlimited levels in plots

Offset variable for generalized linear models

Relative risk and marginal effects for GzL Mixed

Better options for syntax mode

Improvements in the R syntax

Proportional odds ordinal regression

Multinomial marginal effects

Marginal effects

Models comparison

vcov glm

Major options names change (this will break back compatibility for good)

Variance partitioning coefficients in mixed models

Ordinal regression in GzLM

New plots for assumptions in mixed

Precision information in beta models

beta regression

it works

autoregressive and unstructured residual variances and covariances

better dispatch

fixing some plot aesthetics

More solid nested formulas

Version 3

Support for parallel computations of bootstrap stats

Work on bootstrap

Adjusted R2 for gzlm

Model comparison for clm

Fix posthoc for clm

Marginal effects for ordinal models

Parallel test for proportional odds models

Different heteroschedasticity-consistent standard error methods for the general linear model

Efficient bootstrap confidence intervals

New names for commands in R interface

Pretty good R interface

Plots for all generalized mixed models

Removable notes for tables

Robust F-tests for lm models

Models comparison for multinomila mixed models

Multinomial mixed model

Options for methods for plotting random effects

Better random effects plot

Unlimited levels in plots

Offset variable for generalized linear models

Relative risk and marginal effects for GzL Mixed

Better options for syntax mode

Improvements in the R syntax

Proportional odds ordinal regression

Multinomial marginal effects

Marginal effects

Models comparison

vcov glm

Major options names change (this will break back compatibility for good)

Variance partitioning coefficients in mixed models

Ordinal regression in GzLM

New plots for assumptions in mixed

Major options names change (this will break back compatibility for good)

Variance partitioning coefficients in mixed models

Ordinal regression in GzLM

New plots for assumptions in mixed

- Multinomial labels in simple effects

- Fix relative risk table

Random effects in plots (again)

Percentiles labels

Fix post-hoc tests columns

Smooth random effects plot lines

Improved random effects listing for GzLMM

Allow strange names in mixed plots

Random effects listing prevents combinatoric explotion

Fix dots in effect sizes table

Update effect sizes

Fix multinomial posthoc labels

Better effect size indices for simple effects in GLM

Total df in GLM

- Better effect size indices in GLM

- Fix issue with effect size in 2.5.3

- Cluster-based centering (second issue)

Fix cluster-based centering for strange combinations of cluster variables

Fix clusterbased centering in glmmixed

Fix simple effects for multinomial models

Fix cluster centering for integer coded clusters

GLM tot SS

Centered covariated for GLM

Fix for bootstrap CI for random effect

Fix random coefs CI when covariance are present

Update some tests

Fix confidence intervals labels

- Fix SS total for GLM

Correct dodging of plots

Fix transfer random effect UI

Spelling errors in Gmixed

Confidence intervals for generalized mixed models

Confidence intervals for random effects in mixed models

Better labels in Gmixed info table

BIC in GzLM

Save residuals and predicted for Gz mixed

Save predicted and residuals for GzLM

Save predicted and residuals for mixed models

Code restructcuring

Tidy format code

Fix order of levels in posthoc tests

jamovi version compliance

Fix jamovi miniapp

Better labels in Gmixed info table

BIC in GzLM

Save residuals and predicted for Gz mixed

Save predicted and residuals for GzLM

Save predicted and residuals for mixed models

Code restructcuring

Tidy format code

Fix order of levels in posthoc tests

plot() function in R

Suppress annoying warnings

add plot to the R interface

Fix gamlj_simpleEffects() output

Improved R interface

Better options structure in R for all models

Fix posthoc documentation

Better options structure when passed by R, for contrasts and scling in GLM

Better effect size indexes for GLM

Change scale of the dependent variable in GLM and Mixed

Dependent variable transformation for GLM and Mixed

fix direction description in Generalized models

Choose DF method in mixed models

Better ICC

Fix ICC for Generalized mixed

Fix labels in random coefficients histogram

Add posthoc and simpleEffects convenience function for R

Better warnings for Generalized Linear Models

Warning for not integer variable in Poisson models

Fixed post-hoc interaction emmeans issue

Assumptions checking plots for GLM and Mixed Models

Greek letters in windows

Effect size details for GLM

Fix logLik in Mixed Models

LogLik comment in Generalized Mixed Models

Fix resources limit bug

Info (effect sizes and F test) for intercept in the General Linear Model

Adjustments to the new version of lme4

Add data for Negative Binomial Mixed Model examples

ICC for Generalized Mixed Models

Overdispersion indicator for Generalized Linear Models

Overdispersion indicator for Generalized Mixed Models

Fix methods for C.I. in Generalized Mixed Models

Fix plot for NB Mixed models

First implementation of Mixed Negative Binomial models

Fix LRT for random effects

Update R help

fix order of interactions in Gzlm

Fix order of interactions in GLM R interface

Fix multinomial estimates bug

response type for predicted in R interface

Fix plots in R

Fix small bugs related with standardizing within clusters in mixed models

Fix plots in mixed with multiple clustering variables

fix update in R interface

update tests for R interface

Center covariates by default in R interface

Extract predicted values in R interface for all models

Different optimizers in GzMixed

Improved handling of aliased models

GLM and GzLM handle cases where parameters are not estimates

Improved warnings and errors for GzMixed

Improved warnings and errors form GzLM

Fix confidence intervals feeback for singular models

Fix results for singular rank models

Mixed: add info about optimizer

Mixed: Improved convergence with different optimizers

Fix jmvcore calls

Version 2.0.2

Fix random effects plot in gzmlmixed

Fix simple effects in R 3.6

Fix locate issue in linux

optimizer = “bobyqa” for generalized mixed models

fix Random Effects plot of linear predictor

Color observed scores in plots when moderator is categorical

BIC in mixed models

Allow F and t test in simple effects for large sample in Mixed models

Different methods for CI in the generalized mixed models

AIC, BIC and Deviance for Generalized Mixed Models

Generalized mixed models

New dataset for Poisson model testing

new tests for R package

Proper labels for estimated marginal means in GzLM

Fix effect size indexes defaults for custom model

Custom distribution and link function in the GzLM

Fix Relative Risk CI inversion

- fix gzlm UI bug

Update info table when intercept is changed

Fix bug in updating confidence interval length

Relative Risk for logistic regression

add singular fit check in mixed models

fix the AIC in info table

EXp(B) confidence intervals

- polynomial effects
- Update graphs when model terms are changed
- Fix the R-squared for not binomial GZLM
- added datasets

- Fix bug in simple effects display in Windows 10
- Fix simple effects for “dummy” coded factors

- add R interface command to obtain a ggplot object
- fix some characters in Windows

- bug fix regarding recycling results with very large datasets
- Estimated marginal means for conditioned covariates
- contrasts labels in the simple effects parameters table
- contrasts labels in the plots
- custom levels for conditioning of continuous variables involved in interactions
- labels or values in simple effects tables and plots for continuous covariates
- fix interaction disappearing from model declaration
- fix variables name with spaces and weired characters
- Improved description of contrast coding
- add dummy coding (0 and 1) with intercept equal to reference group
- Fix interaction symbol in windows 10
- Restructuring of simple effects and posthoc table for better reading
- Improved compatibility with R when loaded as R package
- Helper functions to interact with the results in R
- Recycle of table results to speed up results updating
- Fix for factor levels labels with spaces and other weired characters
- Fix for variable names with spaces and other weired characters
- Improved plots

- Intra-class correlation for random intercepts
- Random effects plots
- LRT for random effects
- Fix for models without fixed intercept
- Fix for random intercept only models
- Wider range of estimation techniques when model does not converge at first run
- Improved warnings and comments
- More flexible estimation of simple effects

- Added Kolmogorov-Smirnov and Shapiro-Wilk tests for normality of residuals
- Added Adjusted R-squared

- Several small bug fixes
- Improved info table regarding model implementation

- fix cluster-based centering and standardizing

- Fix multinomial plot axes

- Probit model
- Over-dispersed Poisson model
- Negative binomial model

- Plot without confidence intervals
- Contrasts coding in line wiht ANOVA module

Plotting raw data along with predicted effects

Y-axis range can be set to the range of the dependent variable

Confidence intervals for all models in the plots

Catching several errors with degenerated or non-estimable multinomial models

Fixed a bug in the GZLM R-squared. Now the R-squared corresponds to McFadden’s R squared ref info

Fix errors with non-standard names of variables

Better warnings when emmeans fails to estimate the post-hocs in GZLM

Labels in multinomial plots for separate lines variable

Uncorrelated random effects option now works

- First release to go public